MCCMB

Moscow Conference on
Computational Molecular Biology
(MCCMB'15)

Program of the Conference

For speakers: please prepare your presentations in format 16:9.

This program in xls format

July 16th

Thursday

9.0010.00Registration and morning coffeeMSU, Biological Faculty
10.0010.10

Opening

MSU, Biological Faculty, auditorium M1
10.1011.30

Bacterial genomics

M1
10.1010.50Armen MulkidjanianEmergence of Membrane Bioenergetics from Ancient Systems of Na+/K+ Homeostasis
10.5011.10Igor ZhulinA universal signaling mechanism in bacterial chemoreceptors
11.1011.30Dmitry RavcheevGenomic analysis of the respiration the microbiota of human intestine
11.3012.00Coffee break
12.0013.20

Transcriptomics

M1
12.0012.40Peter KharchenkoClassifying transcriptional and genetic heterogeneity in single-cell measurements
12.4013.00Maxim ArtyomovNetwork integration of parallel metabolomic-transcriptional data reveals novel metabolic modules regulating divergent macrophage polarization
13.0013.20Yuriy Orlov, Haihua BaiDifferential gene expression by RNA-seq data in brain structures of laboratory animals with aggressive and tolerant behavior
13.2015.00Lunch break
15.0016.40

Replication and chromatin

M1
15.0015.40Maga RowickaInferring direction of replication fork and mechanism of DNA damage using sequencing data
15.4016.00Vladimir SeplyarskyAPOBEC-induced mutations are strongly enriched on the lagging strand during replication in human cancers
16.0016.40

Pre-party talk

M1
16.0016.40David ShermanDiversity and Domestication in Oenological Yeasts
16.4018.40

Poster session

MSU, Biological Faculty, 1st floor hall
18.4019.00Buses depart for the Conference dinner
19.00

Dinner

July 17th

Friday

9.0010.00Morning coffee
10.0015.00

Satellite event: OMICS–2015

(Skolkovo Foundation and EMC)
MSU, Biological Faculty, auditorium M1
10.10Yuri NikolskyIntroduction
10.15Pakhomov or MeyerIntroduction
10.10Introduction of Jury
10.3012.10Projects 1-10Presentation of projects
12.1012.40Coffee break
12.40Projects 11-20Presentation of projects
14.2014.40JuryCounting
14.4015.00Announcement of winners, presentation of awards, conclusion
10.0016.10

Satellite event: MoBiLe 10Y symposium

(with Leiden University Medical Center, NL)
MSU, Faculty of Bioengineering and Bioinformatics, auditorium 221
10.0010.10A.E.Gorbalenya, B.A.FeniukWelcome
10.1010.40A.E.GorbalenyaFast evolution of a conserved residue of polyomaviruses defines a new mechanism of adaptation that operates by accelerated codon-constrained Val-Ala (COCO-VA) toggling within an intrinsically disordered protein region
10.4011.00I.PulyakhinaThe impact of biological ageing on RNA processing
11.0011.20S.VinogradovaProbing-directed structured elements detection in RNA sequences
11.2011.50O.A. MayborodaMobilis in MoBiLe: Students in a Dynamic Research Field
11.5012.10Coffee break
12.1012.40P.A.C.'t HoenNovel insights in the regulation of mRNA transcription, processing and translation through integration of mRNA sequencing data
12.4013.00E.KhrameevaActive chromatin regions are sufficient to define borders of topologically associated domains in D. melanogaster interphase chromosomes
13.0014.40Lunch break
14.4015.10A.A.MironovEpigenomics, RNA etc.
15.1015.30I.RusinovA comparison of two methods for detection of exceptional words in genomic sequences of prokaryotes
15.3015.50P.SinitcynPeptide search engine approach for detection of translated mutations
15.5016.10B.NagaevNPG-explorer: a new tool for nucleotide pangenome construction and analysis of closely related prokaryotic genomes
15.2016.20

Medical bioinformatics

MSU, Biological Faculty, auditorium M1
15.2015.50Michael TartakovskyBuilding a Sustainable Bioinformatics Program Through Integrated Support
15.5016.20Alexander RosenthalNetwork of the Country Tuberculosis Portals
16.2017.00

Cancer–1

M1
16.2017.00Emmanuel BarillotDeciphering gene interaction to explain tumor progression
17.0017.30Coffee break
17.3019.10

Cancer–2

M1
17.3017.50Jia LiA model for scoring damaging mutations in the non-coding tumoral genome based on germline and tumor data
17.5018.10Ivan KulakovskiySelection pressure on breast cancer somatic mutations revealed by bioinformatics sequence analysis
18.1018.30Mikhail PyatnitskiySearching For Essential Cancer Proteins: Analysis Of Hypomutated Genes In Skin Melanoma
18.3019.10Andrei ZinovyevRevealing mechanisms of cancer progression by pan-cancer deconvolution of tumoral transcriptomes

July 18th

Saturday

9.0010.00Morning coffee
10.0011.40

Methods and algorithms

M1
10.0010.20Tatiana TatarinovaAnalysis of variation in 3000 rice genomes project
10.2010.40Ancha BaranovaDistance-based profiling aids in evaluation of ageing-related phenomena
10.4011.00Max AlekseyevScaffold assembly based on genome rearrangement analysis
11.0011.20Ekaterina Myasnikova, Alexander SpirovA method for model comparison based on the parameter sensitivity measures
11.2011.40Anna IgolkinaMethod to predict the percentage of cell types in human blood
11.4012.10Coffee break
12.1013.30

Systems biology: Mammals and beyond

M1
12.1012.50Alistar ForrestMammalian Systems biology
12.5013.30Vadim GladyshevGenomics of Lifespan Control
13.3015.00Lunch break
15.0016.00

Genomics of regulation

M1
15.0015.20Arthur Dergilev, Ming ChenComputer analysis of genome co-localization of transcription factor binding sites based on ChIP-seq data
15.2015.40Victoria MironovaSearch for simple and composite auxin responsive elements in Arabidopsis thaliana genome
15.4016.00Ivan AntonovAntisense interactions of long noncoding RNAs in human cells
16.0016.40

Viruses–1

M1
16.0016.40Manja MarzChallenges in virus genomics
16.4017.10Coffee break
17.1017.30

Viruses–2

M1
17.1017.30Olga KalininaSequence and structural analysis of related proteins in distant viral species
17.3019.10

Proteins

M1
17.3017.50Dmitry SuplatovBioinformatic analysis of diverse protein superfamilies to design improved enzymes
17.5018.10Boris SobolevDetecting the features of functional specificity in protein families based on the local sequence similarity
18.1018.30Oxana GalzitskayaDetermination of the size of folding nuclei of protofibrils from the concentration dependence of the rate and lag-time of their formation
18.3019.10Pavel BaranovAssessing protein synthesis with ribosome profiling

July 19th

Sunday

9.0010.00Morning coffee
10.0011.40

Genomics of anhydrobiosis

MSU, Biological Faculty, M1
10.0010.20Wu HuiguangEvolution of Camelids
10.2010.40Oleg GusevAnhydrobiosis in the sleeping chironomids: where are we now
10.4011.00Pavel MazinExpression regulation of desiccation-resistance genes in Polypedilum vanderplanki
11.0011.20Olga KozlovaMolecular basics of different mechanisms of desiccation tolerance in Chironomidae midges
11.2011.40Elena ShagimardanovaAdapting to extremes: linking metabolome and genome of an anhydrobiotic insects
11.4012.10Coffee break
12.1013.30

Toolkits for anhydrobiosis research

M1
12.1012.50Oleg GusevSingle cell molecular toolkit for inducible resistance to complete desiccation
12.5013.30Richard CornetteGenetic toolkit for investigation of anhydrobiosis: promoters and RNAi
13.3015.00Lunch break
15.0016.00

Genome structure

M1
15.0015.20Igor SharakhovGenome mapping revealed scaffold misassemblies and elevated gene shuffling on the X chromosome in malaria mosquitoes
15.2015.40Valentina BoevaDetection of short size mutations and copy number alterations in ultra-deep targeted sequencing data
15.4016.00Tatiana PopovaGenomic structural instability and homologous recombination deficiency in breast and ovarian cancers
16.0016.20Galina KravatskayaGenome Track Analyzer : New tool for genome-wide study of correlations between distributed genome features
16.2016.40Vladimir BabenkoTale on the transposons on chromatin landscape
16.4017.10Coffee break
17.1019.10

Evolution

M1
17.1017.30Vladimir MakarenkovAssessing the impact of horizontal gene transfer on the evolution of prokaryotes
17.3017.50Konstantin GunbinRare amino acid changes fixation drives divergence in Metazoa evolution
17.5018.10Margarita MeerEvolution of TAG codon in Methanosarcina
18.1018.30Dinara UsmanovaA model of protein evolution within local fitness landscape changing with time
18.3019.10Fedor KondrashovChartering the local fitness landscape of the green fluorescent protein
19.1019.20Closing
19.30

Farewell party



Contact: AntoninaBerkut@gmail.com

© MCCMB'15, 2015